Course curriculum

  • 1

    Reproducibility Module Videos

    • Introduction to Reproducibility

    • Data Management

    • Electronic Lab Notebooks

    • Protocol Sharing

    • Reagent Sharing

    • Data and Code Sharing

    • Data Analysis and Visualization
  • 2

    Getting organized with Open Science Framework

    • Open Science Framework Demo

    • Reproducibility Introduction Video

    • Open Science Framework Demo Guide

    • Open Science Framework Slidedeck

    • Open Science Framework Module Instructor Guide

    • Open Science Framework Zoom Session Recording
  • 3

    Literate programming with RMarkdown and RStudio

    • RMarkdown with RStudio Demo

    • RMarkdown with RStudio Demo Guide

    • RMarkdown with RStudio Slidedeck

    • RMarkdown with RStudio Module Instructor Guide

    • RMarkdown with RStudio Zoom Lesson Recording
  • 4

    Sharing environments with Binder

    • Binder Demo

    • Binder Slidedeck

    • Binder Demo Guide

    • Binder Module Instructor Guide
  • 5

    Sharing pipelines with Renku

    • Renku Demo

    • Renku Demo Guide

    • Renku Slidedeck

    • Renku Module Instructor Guide